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1

Cosmetic talc as a risk factor for pleural mesothelioma: a weight of evidence evaluation of the epidemiology

Finley, Brent L., Benson, Stacey M., Marsh, Gary M.

Journal:

Inhalation Toxicology

Year:

2017

Language:

english

File:

PDF, 841 KB

english, 2017

2

Response to letters regarding “Cosmetic talc as a risk factor for pleural mesothelioma: a weight of evidence evaluation of the epidemiology”

Finley, Brent L., Benson, Stacey M., Marsh, Gary M.

Journal:

Inhalation Toxicology

Year:

2018

Language:

english

File:

PDF, 913 KB

english, 2018

3

Occupational exposures to cosmetic talc and risk of mesothelioma: an updated pooled cohort and statistical power analysis with consideration of latency period

Marsh, Gary M., Ierardi, A. Michael, Benson, Stacey M., Finley, Brent L.

Journal:

Inhalation Toxicology

Year:

2019

Language:

english

File:

PDF, 1.63 MB

english, 2019

4

Modeling immune cell behavior across scales in cancer

Makaryan, Sahak Z., Cess, Colin G., Finley, Stacey D.

Journal:

Wiley Interdisciplinary Reviews: Systems Biology and Medicine

Year:

2020

File:

PDF, 2.48 MB

2020

5

Mathematical modelling reveals cellular dynamics within tumour spheroids

Bull, Joshua A., Mech, Franziska, Quaiser, Tom, Waters, Sarah L., Byrne, Helen M., Finley, Stacey

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 21.80 MB

2020

6

Thermodynamic analysis of biodegradation pathways

Stacey D. Finley, Linda J. Broadbelt, Vassily Hatzimanikatis

Journal:

Biotechnology and Bioengineering

Year:

2009

Language:

english

File:

PDF, 479 KB

english, 2009

7

Computational framework for predictive biodegradation

Stacey D. Finley, Linda J. Broadbelt, Vassily Hatzimanikatis

Journal:

Biotechnology and Bioengineering

Year:

2009

Language:

english

File:

PDF, 457 KB

english, 2009

8

Timescale analysis of rule-based biochemical reaction networks

David J. Klinke II, Stacey D. Finley

Journal:

Biotechnology Progress

Year:

2012

Language:

english

File:

PDF, 2.06 MB

english, 2012

9

Diamide amino-imidazoles: A novel series of γ-secretase inhibitors for the treatment of Alzheimer’s disease

Michael A. Brodney, David D. Auperin, Stacey L. Becker, Brian S. Bronk, Tracy M. Brown, Karen J. Coffman, James E. Finley, Carol D. Hicks, Michael J. Karmilowicz, Thomas A. Lanz, Dane Liston, Xingrong

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2011

Language:

english

File:

PDF, 2.26 MB

english, 2011

10

Design, synthesis, and in vivo characterization of a novel series of tetralin amino imidazoles as γ-secretase inhibitors: Discovery of PF-3084014

Michael A. Brodney, David D. Auperin, Stacey L. Becker, Brian S. Bronk, Tracy M. Brown, Karen J. Coffman, James E. Finley, Carol D. Hicks, Michael J. Karmilowicz, Thomas A. Lanz, Dane Liston, Xingrong

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2011

Language:

english

File:

PDF, 1.16 MB

english, 2011

11

Pharmacokinetics and pharmacodynamics of VEGF-neutralizing antibodies

Stacey D Finley, Marianne O Engel-Stefanini, PI Imoukhuede, Aleksander S Popel

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 1.16 MB

english, 2011

12

Inferring relevant control mechanisms for interleukin-12 signaling in naïve CD4+ T cells

Finley, Stacey D, Gupta, Deepti, Cheng, Ning, Klinke, David J

Journal:

Immunology & Cell Biology

Year:

2010

Language:

english

File:

PDF, 612 KB

english, 2010

13

Evidence that nuclear factor IA inhibits repair after white matter injury

Stephen P. J. Fancy, Stacey M. Glasgow, Meggie Finley, David H. Rowitch, Benjamin Deneen

Journal:

Annals of Neurology

Year:

2012

Language:

english

File:

PDF, 3.71 MB

english, 2012

14

In silico feasibility of novel biodegradation pathways for 1,2,4-trichlorobenzene

Stacey D Finley, Linda J Broadbelt, Vassily Hatzimanikatis

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 570 KB

english, 2010

15

Sox9 and NFIA Coordinate a Transcriptional Regulatory Cascade during the Initiation of Gliogenesis

Peng Kang, Hyun Kyoung Lee, Stacey M. Glasgow, Meggie Finley, Tataka Donti, Zachary B. Gaber, Brett H. Graham, Aaron E. Foster, Bennett G. Novitch, Richard M. Gronostajski, Benjamin Deneen

Journal:

Year:

2012

Language:

english

File:

PDF, 3.07 MB

english, 2012

16

Predicting the Effects of Anti-angiogenic Agents Targeting Specific VEGF Isoforms

Finley, Stacey D., Popel, Aleksander S.

Journal:

The AAPS Journal

Year:

2012

Language:

english

File:

PDF, 665 KB

english, 2012

17

Dendritic spine density deficits in the hippocampal CA1 region of young Tg2576 mice are ameliorated with the PDE9A inhibitor PF-04447943

Kleiman, Robin J., Lanz, Thomas A., Finley, James E., Bove, Susan E., Majchrzak, Mark J., Becker, Stacey L., Carvajal-Gonzales, Santos, Kuhn, A. Max, Wood, Kathleen M., Mariga, Abigail, Nelson, Freder

Journal:

Alzheimer's & Dementia

Year:

2010

Language:

english

File:

PDF, 62 KB

english, 2010

18

P2-375: Efficacy of the novel γ-secretase inhibitor, PF-3084014, in reducing Aβ in brain, CSF, and plasma in guinea pigs and Tg2576 mice

Wood, Kathleen M., Lanz, Thomas A., Coffman, Karen J., Becker, Stacey L., van Deusen, Jeffrey, Nolan, Charles E., Richter, Karl E.G., Finley, James E., Brown, Tracey M., Brodney, Michael A., Tate, Bar

Journal:

Alzheimer's & Dementia

Year:

2008

Language:

english

File:

PDF, 77 KB

english, 2008

19

A systems biology view of blood vessel growth and remodelling

Logsdon, Elizabeth A., Finley, Stacey D., Popel, Aleksander S., Gabhann, Feilim Mac

Journal:

Journal of Cellular and Molecular Medicine

Year:

2014

Language:

english

File:

PDF, 504 KB

english, 2014

20

Computational systems biology approaches to anti-angiogenic cancer therapeutics

Finley, Stacey D., Chu, Liang-Hui, Popel, Aleksander S.

Journal:

Drug Discovery Today

Year:

2015

Language:

english

File:

PDF, 833 KB

english, 2015

21

Compartment Model Predicts VEGF Secretion and Investigates the Effects of VEGF Trap in Tumor-Bearing Mice

Finley, Stacey D., Dhar, Manjima, Popel, Aleksander S.

Journal:

Frontiers in Oncology

Year:

2013

Language:

english

File:

PDF, 1.18 MB

english, 2013

22

Predictive Model of Lymphocyte-Specific Protein Tyrosine Kinase (LCK) Autoregulation

Rohrs, Jennifer A., Wang, Pin, Finley, Stacey D.

Journal:

Cellular and Molecular Bioengineering

Year:

2016

Language:

english

File:

PDF, 3.55 MB

english, 2016

23

A multiscale computational model predicts distribution of anti-angiogenic isoform VEGF165b in peripheral arterial disease in human and mouse

Chu, Liang-Hui, Ganta, Vijay Chaitanya, Choi, Min H., Chen, George, Finley, Stacey D., Annex, Brian H., Popel, Aleksander S.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.81 MB

english, 2016

24

Predictive model of thrombospondin-1 and vascular endothelial growth factor in breast tumor tissue

Rohrs, Jennifer A, Sulistio, Christopher D, Finley, Stacey D

Journal:

npj Systems Biology and Applications

Year:

2016

Language:

english

File:

PDF, 2.41 MB

english, 2016

25

Monitoring Severity of Multiple Organ Dysfunction Syndrome

Typpo, Katri V., Wong, Hector R., Finley, Stacey D., Daniels, Rodney C., Seely, Andrew J. E., Lacroix, Jacques

Journal:

Pediatric Critical Care Medicine

Year:

2017

Language:

english

File:

PDF, 462 KB

english, 2017

26

Extubation Failure and Tracheostomy Placement in Children with Acute Neurocritical Illness

Cohn, Ellen C., Robertson, Tammy S., Scott, Stacey A., Finley, Andre M., Huang, Rong, Miles, Darryl K.

Journal:

Neurocritical Care

Year:

2017

Language:

english

File:

PDF, 433 KB

english, 2017

27

The impact of tumor receptor heterogeneity on the response to anti-angiogenic cancer treatment

Li, Ding, Finley, Stacey D.

Journal:

Integrative Biology

Year:

2018

Language:

english

File:

PDF, 3.54 MB

english, 2018

28

Predictive model identifies strategies to enhance TSP1-mediated apoptosis signaling

Wu, Qianhui, Finley, Stacey D.

Journal:

Cell Communication and Signaling

Year:

2017

Language:

english

File:

PDF, 2.42 MB

english, 2017

29

The mineralogy and epidemiology of cosmetic talc

Barlow, Christy A., Marsh, Gary M., Benson, Stacey, Finley, Brent L.

Journal:

Toxicology and Applied Pharmacology

Year:

2018

Language:

english

File:

PDF, 715 KB

english, 2018

30

Computational Model Predicts the Effects of Targeting Cellular Metabolism in Pancreatic Cancer

Roy, Mahua, Finley, Stacey D.

Journal:

Frontiers in Physiology

Year:

2017

Language:

english

File:

PDF, 2.44 MB

english, 2017

31

Computational Model of Chimeric Antigen Receptors Explains Site-Specific Phosphorylation Kinetics

Rohrs, Jennifer A., Zheng, Dongqing, Graham, Nicholas A., Wang, Pin, Finley, Stacey D.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 2.00 MB

english, 2018

32

Mechanistic insight into activation of MAPK signaling by pro-angiogenic factors

Song, Min, Finley, Stacey D.

Journal:

BMC Systems Biology

Year:

2018

Language:

english

File:

PDF, 2.10 MB

english, 2018

33

In silico mouse study identifies tumour growth kinetics as biomarkers for the outcome of anti-angiogenic treatment

Wu, Qianhui, Arnheim, Alyssa D., Finley, Stacey D.

Journal:

Journal of The Royal Society Interface

Year:

2018

Language:

english

File:

PDF, 1.07 MB

english, 2018

34

Systematically understanding the immunity leading to CRPC progression

Ji, Zhiwei, Zhao, Weiling, Lin, Hui-Kuan, Zhou, Xiaobo, Finley, Stacey

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 5.28 MB

english, 2019

35

Modeling cell signaling in heterogeneous cancer environments

Wu, Qianhui, Finley, Stacey D.

Journal:

Current Opinion in Systems Biology

Year:

2019

Language:

english

File:

PDF, 3.35 MB

english, 2019

36

Systematically understanding the immunity leading to CRPC progression

Ji, Zhiwei, Zhao, Weiling, Lin, Hui-Kuan, Zhou, Xiaobo, Finley, Stacey

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 5.28 MB

2019

37

Response to letters regarding “Occupational exposures to cosmetic talc and risk of mesothelioma: an updated pooled cohort and statistical power analysis with consideration of latency period”

Marsh, Gary M., Ierardi, A. Michael, Benson, Stacey M., Finley, Brent L.

Journal:

Inhalation Toxicology

Year:

2019

Language:

english

File:

PDF, 1.08 MB

english, 2019

38

Response to letters regarding “Occupational exposures to cosmetic talc and risk of mesothelioma: an updated pooled cohort and statistical power analysis with consideration of latency period”

Marsh, Gary M., Ierardi, A. Michael, Benson, Stacey M., Finley, Brent L.

Journal:

Inhalation Toxicology

Year:

2019

File:

PDF, 1.08 MB

2019

39

Multi-scale Computational Model of Immune Cell Activation in Cancer

Finley, Stacey D.

Journal:

Biophysical Journal

Year:

2020

Language:

english

File:

PDF, 43 KB

english, 2020

40

Parallel Tempering with Lasso for model reduction in systems biology

Gupta, Sanjana, Lee, Robin E. C., Faeder, James R., Finley, Stacey

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 4.30 MB

2020

41

Mechanistic models of PLC/PKC signaling implicate phosphatidic acid as a key amplifier of chemotactic gradient sensing

Nosbisch, Jamie L., Rahman, Anisur, Mohan, Krithika, Elston, Timothy C., Bear, James E., Haugh, Jason M., Finley, Stacey

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 3.24 MB

2020

42

Unveiling dynamic metabolic signatures in human induced pluripotent and neural stem cells

Vasconcelos e SÃ¡, JoÃ£o, SimÃ£o, Daniel, Terrasso, Ana P., Silva, Marta M., Brito, Catarina, Isidro, InÃªs A., Alves, Paula M., Carrondo, Manuel J. T., Finley, Stacey

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 3.79 MB

2020

43

Mathematical Model Predicts Effective Strategies to Inhibit VEGF-eNOS Signaling

Wu, Qianhui, Finley, Stacey D.

Journal:

Journal of Clinical Medicine

Year:

2020

File:

PDF, 2.67 MB

2020

44

Enhancing network activation in natural killer cells: predictions from in silico modeling

Makaryan, Sahak Z, Finley, Stacey D

Journal:

Integrative Biology

Year:

2020

File:

PDF, 1.02 MB

2020

45

Discriminating between negative cooperativity and ligand binding to independent sites using pre-equilibrium properties of binding curves

Sevlever, Federico, Di Bella, Juan Pablo, Ventura, Alejandra C., Finley, Stacey

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 4.89 MB

2020

46

Is mammography screening beneficial: An individual-based stochastic model for breast cancer incidence and mortality

Le, Thuy T. T., Adler, Frederick R., Finley, Stacey

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 2.82 MB

2020

47

ERK Activation in CAR T Cells Is Amplified by CD28-Mediated Increase in CD3Î¶ Phosphorylation

Rohrs, Jennifer A., Siegler, Elizabeth L., Wang, Pin, Finley, Stacey D.

Journal:

Year:

2020

File:

PDF, 3.63 MB

2020

48

ERK and Akt exhibit distinct signaling responses following stimulation by pro-angiogenic factors

Song, Min, Finley, Stacey D.

Journal:

Cell Communication and Signaling

Year:

2020

File:

PDF, 2.13 MB

2020

49

Dynamic Regulation of JAK-STAT Signaling Through the Prolactin Receptor Predicted by Computational Modeling

Mortlock, Ryland D., Georgia, Senta K., Finley, Stacey D.

Journal:

Cellular and Molecular Bioengineering

Year:

2020

File:

PDF, 1.91 MB

2020